{"id":1069,"date":"2013-11-01T21:09:27","date_gmt":"2013-11-01T13:09:27","guid":{"rendered":"http:\/\/www.hsyyf.me\/?p=1069"},"modified":"2014-08-13T12:19:43","modified_gmt":"2014-08-13T04:19:43","slug":"vnl%e8%bd%acgaussian%e8%84%9a%e6%9c%ac","status":"publish","type":"post","link":"https:\/\/www.hsyyf.me\/?p=1069","title":{"rendered":"VNL\u8f6cGaussian\u811a\u672c"},"content":{"rendered":"<p>\u6700\u8fd1\u5728\u7528\u9ad8\u65af\u7b97\u5206\u5b50\u7ed3\u6784\uff0cVNL\u6587\u4ef6\u624b\u52a8\u6539\u6210Gaussian\u6587\u4ef6\u5404\u79cd\u75db\u82e6\uff0c\u624b\u52a8\u5199\u4e86\u4e00\u4e2a\u8f6c\u6362\u811a\u672c\uff0c\u628a\u539f\u5b50\u7ed3\u6784\u548c\u5750\u6807\u590d\u5236\u8fdb\u53bb\u5c31\u53ef\u4ee5\u4e86\u3002<\/p>\n<p><code lang=\"python\">def Transfer(elements,coordinates):<br \/>\n    f=open(\"data.gjf\",\"w\")<br \/>\n    f.write('%chk=data.chk\\n%mem=8GB\\n%nproc=4\\n#\\n\\nTitle\\n\\n0 1\\n')<br \/>\n    Temp='  ';<br \/>\n    n=len(elements)<br \/>\n    for i in range(n):<br \/>\n        f.write(elements[i])<br \/>\n        f.write(Temp)<br \/>\n        f.write(str(coordinates[i][0]))<br \/>\n        f.write(Temp)<br \/>\n        f.write(str(coordinates[i][1]))<br \/>\n        f.write(Temp)<br \/>\n        f.write(str(coordinates[i][2]))<br \/>\n        f.write('\\n')<br \/>\n    f.close()<\/p>\n<p>Carbon='C'<br \/>\nHydrogen='H'<br \/>\nIron='Fe'<br \/>\nGold='Au'<br \/>\nNitrogen='N'<br \/>\nSulfur='S'<\/p>\n<p># Scattering elements and coordinates<br \/>\nelements=[Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Carbon,   Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Nitrogen, Carbon,   Carbon,<br \/>\n                       Nitrogen, Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Nitrogen, Carbon,   Carbon,<br \/>\n                       Nitrogen, Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Carbon,   Carbon,   Carbon,<br \/>\n                       Carbon,   Carbon,   Carbon,   Carbon,<br \/>\n                       Hydrogen, Hydrogen, Hydrogen, Hydrogen,<br \/>\n                       Hydrogen, Hydrogen, Hydrogen, Hydrogen,<br \/>\n                       Hydrogen, Hydrogen, Sulfur,   Hydrogen,<br \/>\n                       Hydrogen, Hydrogen, Hydrogen, Hydrogen,<br \/>\n                       Hydrogen, Sulfur,   Hydrogen, Hydrogen,<br \/>\n                       Hydrogen, Hydrogen, Gold,    Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold,     Gold,     Gold,<br \/>\n                       Gold,     Gold]  <\/p>\n<p>## Scattering coordinates<br \/>\ncoordinates=[[  0.00000000e+00,   0.00000000e+00,   4.70886880e+00],<br \/>\n                          [  4.44089210e-16,   1.66483653e+00,   7.06330329e+00],<br \/>\n                          [ -1.44179070e+00,   2.49725485e+00,   4.70886880e+00],<br \/>\n                          [ -1.44179070e+00,   4.16209126e+00,   7.06330329e+00],<br \/>\n                          [ -2.88358140e+00,   4.99450970e+00,   4.70886880e+00],<br \/>\n                          [ -2.88358140e+00,   6.65934610e+00,   7.06330329e+00],<br \/>\n                          [ -4.32537222e+00,   7.49176455e+00,   4.70886880e+00],<br \/>\n                          [ -4.32537222e+00,   9.15660095e+00,   7.06330329e+00],<br \/>\n                          [  2.88358140e+00,   0.00000000e+00,   4.70886880e+00],<br \/>\n                          [  2.88358140e+00,   1.66483653e+00,   7.06330329e+00],<br \/>\n                          [  1.44179070e+00,   2.49725485e+00,   4.70886880e+00],<br \/>\n                          [  1.44179070e+00,   4.16209126e+00,   7.06330329e+00],<br \/>\n                          [ -9.99999994e-09,   4.99450970e+00,   4.70886880e+00],<br \/>\n                          [ -9.99999905e-09,   6.65934610e+00,   7.06330329e+00],<br \/>\n                          [ -1.44179070e+00,   7.49176455e+00,   4.70886880e+00],<br \/>\n                          [ -1.44179070e+00,   9.15660095e+00,   7.06330329e+00],<br \/>\n                          [  5.76716280e+00,   0.00000000e+00,   4.70886880e+00],<br \/>\n                          [  5.76716280e+00,   1.66483653e+00,   7.06330329e+00],<br \/>\n                          [  4.32537222e+00,   2.49725485e+00,   4.70886880e+00],<br \/>\n                          [  4.32537222e+00,   4.16209126e+00,   7.06330329e+00],<br \/>\n                          [  2.88358140e+00,   4.99450970e+00,   4.70886880e+00],<br \/>\n                          [  2.88358140e+00,   6.65934610e+00,   7.06330329e+00],<br \/>\n                          [  1.44179070e+00,   7.49176455e+00,   4.70886880e+00],<br \/>\n                          [  1.44179070e+00,   9.15660095e+00,   7.06330329e+00],<br \/>\n                          [  8.65074444e+00,   0.00000000e+00,   4.70886880e+00],<br \/>\n                          [  8.65074444e+00,   1.66483653e+00,   7.06330329e+00],<br \/>\n                          [  7.20895386e+00,   2.49725485e+00,   4.70886880e+00],<br \/>\n                          [  7.20895386e+00,   4.16209126e+00,   7.06330329e+00],<br \/>\n                          [  5.76716280e+00,   4.99450970e+00,   4.70886880e+00],<br \/>\n                          [  5.76716280e+00,   6.65934610e+00,   7.06330329e+00],<br \/>\n                          [  4.32537222e+00,   7.49176455e+00,   4.70886880e+00],<br \/>\n                          [  4.32537222e+00,   9.15660095e+00,   7.06330329e+00],<br \/>\n                          [  0.00000000e+00,   0.00000000e+00,   9.41773778e+00],<br \/>\n                          [ -1.44179070e+00,   2.49725485e+00,   9.41773778e+00],<br \/>\n                          [ -2.88358140e+00,   4.99450970e+00,   9.41773778e+00],<br \/>\n                          [ -4.32537222e+00,   7.49176455e+00,   9.41773778e+00],<br \/>\n                          [  2.88358140e+00,   0.00000000e+00,   9.41773778e+00],<br \/>\n                          [  1.44179070e+00,   2.49725485e+00,   9.41773778e+00],<br \/>\n                          [ -9.99999994e-09,   4.99450970e+00,   9.41773778e+00],<br \/>\n                          [ -1.44179070e+00,   7.49176455e+00,   9.41773778e+00],<br \/>\n                          [  5.76716280e+00,   0.00000000e+00,   9.41773778e+00],<br \/>\n                          [  4.32537222e+00,   2.49725485e+00,   9.41773778e+00],<br \/>\n                          [  2.88358140e+00,   4.99450970e+00,   9.41773778e+00],<br \/>\n                          [  1.44179070e+00,   7.49176455e+00,   9.41773778e+00],<br \/>\n                          [  8.65074444e+00,   0.00000000e+00,   9.41773778e+00],<br \/>\n                          [  7.20895386e+00,   2.49725485e+00,   9.41773778e+00],<br \/>\n                          [  5.76716280e+00,   4.99450970e+00,   9.41773778e+00],<br \/>\n                          [  4.32537222e+00,   7.49176455e+00,   9.41773778e+00],<br \/>\n                          [  0.00000000e+00,   6.65934992e+00,   1.17721689e+01],<br \/>\n                          [  2.88357997e+00,   6.65934992e+00,   1.17721689e+01],<br \/>\n                          [  1.44178998e+00,   4.16208982e+00,   1.17721689e+01],<br \/>\n                          [  1.44178998e+00,   5.82693005e+00,   1.41265991e+01],<br \/>\n                          [  1.61401999e+00,   3.11600018e+00,   2.49839953e+01],<br \/>\n                          [  1.65762007e+00,   2.55208015e+00,   2.62577971e+01],<br \/>\n                          [  1.64859998e+00,   3.17923999e+00,   2.75078962e+01],<br \/>\n                          [  1.53460014e+00,   3.31410003e+00,   2.27212961e+01],<br \/>\n                          [  1.58970010e+00,   2.40047002e+00,   2.37421969e+01],<br \/>\n                          [  1.58231008e+00,   4.45072985e+00,   2.46654966e+01],<br \/>\n                          [  1.73837006e+00,   2.43069005e+00,   2.87551954e+01],<br \/>\n                          [  1.70816004e+00,   3.34712005e+00,   2.97537954e+01],<br \/>\n                          [  1.56146991e+00,   4.51820993e+00,   2.77460955e+01],<br \/>\n                          [  1.48399007e+00,   5.87482977e+00,   2.26534956e+01],<br \/>\n                          [  1.44935000e+00,   7.10873985e+00,   2.33438967e+01],<br \/>\n                          [  1.53741014e+00,   4.62734985e+00,   2.33025969e+01],<br \/>\n                          [  1.41015995e+00,   8.58279991e+00,   2.49410971e+01],<br \/>\n                          [  1.38249004e+00,   9.20921993e+00,   2.61912954e+01],<br \/>\n                          [  1.40069997e+00,   8.64422989e+00,   2.74652956e+01],<br \/>\n                          [  1.45685995e+00,   8.41913986e+00,   2.26945971e+01],<br \/>\n                          [  1.42400014e+00,   9.33553028e+00,   2.36931971e+01],<br \/>\n                          [  1.42989004e+00,   7.24107981e+00,   2.47032965e+01],<br \/>\n                          [  1.33337009e+00,   9.35589981e+00,   2.87076967e+01],<br \/>\n                          [  1.36664999e+00,   8.44125938e+00,   2.97285956e+01],<br \/>\n                          [  1.48279011e+00,   7.31153965e+00,   2.77833956e+01],<br \/>\n                          [  1.47015011e+00,   7.13243961e+00,   2.91465967e+01],<br \/>\n                          [  1.52854002e+00,   5.88519001e+00,   2.97956961e+01],<br \/>\n                          [  1.58622992e+00,   4.65224981e+00,   2.91051958e+01],<br \/>\n                          [  1.40487993e+00,   5.86722994e+00,   1.83322981e+01],<br \/>\n                          [  3.30520004e-01,   6.39085007e+00,   1.90617979e+01],<br \/>\n                          [  3.62600058e-01,   6.39199972e+00,   2.04547976e+01],<br \/>\n                          [  1.45944011e+00,   5.87400007e+00,   2.11608961e+01],<br \/>\n                          [  2.52909994e+00,   5.35194969e+00,   2.04153975e+01],<br \/>\n                          [  2.50734997e+00,   5.34707975e+00,   1.90231970e+01],<br \/>\n                          [  1.52636993e+00,   5.88487005e+00,   3.12885969e+01],<br \/>\n                          [  4.84969944e-01,   5.28101969e+00,   3.20121954e+01],<br \/>\n                          [  4.76579994e-01,   5.28035975e+00,   3.34042967e+01],<br \/>\n                          [  1.51823008e+00,   5.88866997e+00,   3.41175955e+01],<br \/>\n                          [  2.56346989e+00,   6.49469995e+00,   3.34102972e+01],<br \/>\n                          [  2.56219006e+00,   6.49029970e+00,   3.20166967e+01],<br \/>\n                          [  1.70467007e+00,   1.46648991e+00,   2.62720965e+01],<br \/>\n                          [  1.48803008e+00,   3.11226010e+00,   2.16614969e+01],<br \/>\n                          [  1.60194004e+00,   1.32142997e+00,   2.36614969e+01],<br \/>\n                          [  1.82535994e+00,   1.35383999e+00,   2.88354967e+01],<br \/>\n                          [  1.77306998e+00,   3.17348003e+00,   3.08184965e+01],<br \/>\n                          [  1.34008014e+00,   1.02950296e+01,   2.61769961e+01],<br \/>\n                          [  1.49588001e+00,   8.59688950e+00,   2.16292971e+01],<br \/>\n                          [  1.42235005e+00,   1.04158297e+01,   2.36124971e+01],<br \/>\n                          [  1.25762999e+00,   1.04323301e+01,   2.87887953e+01],<br \/>\n                          [  1.31677997e+00,   8.63879967e+00,   3.07890967e+01],<br \/>\n                          [  1.44178998e+00,   5.82693005e+00,   1.65465983e+01],<br \/>\n                          [ -5.38360000e-01,   6.79343987e+00,   1.85479982e+01],<br \/>\n                          [ -4.83530015e-01,   6.79189968e+00,   2.10061968e+01],<br \/>\n                          [  3.39748001e+00,   4.95776987e+00,   2.09354971e+01],<br \/>\n                          [  3.35413980e+00,   4.94447994e+00,   1.84737986e+01],<br \/>\n                          [ -3.35060030e-01,   4.81481981e+00,   3.14737967e+01],<br \/>\n                          [ -3.46239954e-01,   4.81056976e+00,   3.39363974e+01],<br \/>\n                          [  1.44331992e+00,   5.85095978e+00,   3.59021986e+01],<br \/>\n                          [  3.38628006e+00,   6.96559000e+00,   3.39415968e+01],<br \/>\n                          [  3.38789988e+00,   6.95269966e+00,   3.14831961e+01],<br \/>\n                          [  1.56031001e+00,   5.23467970e+00,   2.53133963e+01],<br \/>\n                          [  1.51687992e+00,   6.52804995e+00,   2.71353968e+01],<br \/>\n                          [ 0.00000000e+00,   6.65934992e+00,   4.06766279e+01],<br \/>\n                          [  1.44178998e+00,   4.16208982e+00,   4.06766279e+01],<br \/>\n                          [  2.88357997e+00,   6.65934992e+00,   4.06766279e+01],<br \/>\n                          [  1.44178998e+00,   5.82693005e+00,   3.83222006e+01],<br \/>\n                          [  0.00000000e+00,   0.00000000e+00,   4.30333021e+01],<br \/>\n                          [  4.44089210e-16,   1.66483653e+00,   4.53877371e+01],<br \/>\n                          [ -1.44179070e+00,   2.49725485e+00,   4.30333021e+01],<br \/>\n                          [ -1.44179070e+00,   4.16209126e+00,   4.53877371e+01],<br \/>\n                          [ -2.88358140e+00,   4.99450970e+00,   4.30333021e+01],<br \/>\n                          [ -2.88358140e+00,   6.65934610e+00,   4.53877371e+01],<br \/>\n                          [ -4.32537222e+00,   7.49176455e+00,   4.30333021e+01],<br \/>\n                          [ -4.32537222e+00,   9.15660095e+00,   4.53877371e+01],<br \/>\n                          [  2.88358140e+00,   0.00000000e+00,   4.30333021e+01],<br \/>\n                          [  2.88358140e+00,   1.66483653e+00,   4.53877371e+01],<br \/>\n                          [  1.44179070e+00,   2.49725485e+00,   4.30333021e+01],<br \/>\n                          [  1.44179070e+00,   4.16209126e+00,   4.53877371e+01],<br \/>\n                          [ -9.99999994e-09,   4.99450970e+00,   4.30333021e+01],<br \/>\n                          [ -9.99999905e-09,   6.65934610e+00,   4.53877371e+01],<br \/>\n                          [ -1.44179070e+00,   7.49176455e+00,   4.30333021e+01],<br \/>\n                          [ -1.44179070e+00,   9.15660095e+00,   4.53877371e+01],<br \/>\n                          [  5.76716280e+00,   0.00000000e+00,   4.30333021e+01],<br \/>\n                          [  5.76716280e+00,   1.66483653e+00,   4.53877371e+01],<br \/>\n                          [  4.32537222e+00,   2.49725485e+00,   4.30333021e+01],<br \/>\n                          [  4.32537222e+00,   4.16209126e+00,   4.53877371e+01],<br \/>\n                          [  2.88358140e+00,   4.99450970e+00,   4.30333021e+01],<br \/>\n                          [  2.88358140e+00,   6.65934610e+00,   4.53877371e+01],<br \/>\n                          [  1.44179070e+00,   7.49176455e+00,   4.30333021e+01],<br \/>\n                          [  1.44179070e+00,   9.15660095e+00,   4.53877371e+01],<br \/>\n                          [  8.65074444e+00,   0.00000000e+00,   4.30333021e+01],<br \/>\n                          [  8.65074444e+00,   1.66483653e+00,   4.53877371e+01],<br \/>\n                          [  7.20895386e+00,   2.49725485e+00,   4.30333021e+01],<br \/>\n                          [  7.20895386e+00,   4.16209126e+00,   4.53877371e+01],<br \/>\n                          [  5.76716280e+00,   4.99450970e+00,   4.30333021e+01],<br \/>\n                          [  5.76716280e+00,   6.65934610e+00,   4.53877371e+01],<br \/>\n                          [  4.32537222e+00,   7.49176455e+00,   4.30333021e+01],<br \/>\n                          [  4.32537222e+00,   9.15660095e+00,   4.53877371e+01]]<\/p>\n<p>Transfer(elements,coordinates)<br \/>\n<\/code><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u6700\u8fd1\u5728\u7528\u9ad8\u65af\u7b97\u5206\u5b50\u7ed3\u6784\uff0cVNL\u6587\u4ef6\u624b\u52a8\u6539\u6210Gaussian\u6587\u4ef6\u5404\u79cd\u75db\u82e6\uff0c\u624b\u52a8\u5199\u4e86\u4e00\u4e2a\u8f6c\u6362\u811a\u672c\uff0c\u628a\u539f\u5b50\u7ed3\u6784\u548c\u5750\u6807 [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"ngg_post_thumbnail":0,"footnotes":""},"categories":[3],"tags":[],"class_list":["post-1069","post","type-post","status-publish","format-standard","hentry","category-3"],"_links":{"self":[{"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=\/wp\/v2\/posts\/1069","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1069"}],"version-history":[{"count":0,"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=\/wp\/v2\/posts\/1069\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1069"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1069"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.hsyyf.me\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1069"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}